Description:

This presentation discusses current methods used to identify bacteria by 16S rRNA gene sequencing and fungi by use of the ITS (Internal Transcribed Spacers) and D1/D2 regions, including both technical and bioinformatic analyses. Additional content covers use of these methods to identify pathogens in primary samples, example cases and clinical reporting, potential application of next generation sequencing (NGS)-based methods, and considerations for labs developing and implemeting these assays.

Speaker: Lynn Bry, MD, PhD

Host: Colleen Kraft, MD

Duration: 40 min.

Level of Instruction: Basic

 

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Course Information
Course Date:
May 27, 2016
Course Objectives
  • Utilize sequence-based methods to type bacteria and fungi isolated in the clinical microbiology lab.
  • Discuss bioinformatic and informatic infrastructure needed to support assays and their interpretation.
  • Use potential applications for testing on primary samples.
Bacterial and Fungal Typing by Sequence-based Methods
Speaker Information
Lynn Bry MD, PhD  [ view bio ]
Individual topic purchase: Selected
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Bry Presentation
AMP Regular Member: $0.00
AMP Technologist Member: $0.00
AMP Associate Member: $0.00
Non-member Price: $195.00